dipnoi

383511142AFH40435PDGF-Bvascular endothelial growth factor A, partial [Protopterus annectens]Noneblastpalignment
383511144AFH40436PDGF-Bvascular endothelial growth factor A, partial [Protopterus annectens]Noneblastpalignment
1399053474AWT24646PDGF-BPDGFB [Protopterus annectens]PDGF-Bblastpalignment
1399053472AWT24645PDGF-BPDGFA [Protopterus annectens]Noneblastpalignment
AFH40435.1AFH40435PDGF-Dvascular endothelial growth factor A, partial [Protopterus annectens]Noneblastpalignment
AWT24645.1AWT24645PDGF-DPDGFA [Protopterus annectens]Noneblastpalignment
AFH40436.1AFH40436PDGF-Dvascular endothelial growth factor A, partial [Protopterus annectens]Noneblastpalignment
AWT24646.1AWT24646PDGF-DPDGFB [Protopterus annectens]Noneblastpalignment

Here should be the svg tree!

T-COFFEE, Version_11.00.8cbe486 (2014-08-12 22:05:29 - Revision 8cbe486 - Build 477)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=528
*
 BAD AVG GOOD
*
AFH40435.1     :  62
AFH40436.1     :  62
AWT24646.1     :  54
AWT24645.1     :  56
AFH40435.1_1   :  62
AWT24645.1_1   :  56
AFH40436.1_1   :  62
AWT24646.1_1   :  54
VEGF-C         :  41
VEGF-D         :  43
VEGF-A206      :  58
VEGF-A165      :  60
VEGF-A121      :  59
VEGF-B186      :  49
VEGF-B167      :  52
PlGF-1         :  52
VEGF-F         :  52
PDGF-A         :  51
PDGF-B         :  49
PDGF-C         :  40
PDGF-D         :  37
cons           :  52

AFH40435.1     MTH---TAELFK------LLFLVL--LRISHSK--M
AFH40436.1     MTH---TAELFK------LLFLVL--LRISHSK--M
AWT24646.1     ----------MLQ-I-AAVLHLWY-YFAL--AE---
AWT24645.1     ----------MRSYLRFLVLILLC--LPLTVSE---
AFH40435.1_1   MTH---TAELFK------LLFLVL--LRISHSK--M
AWT24645.1_1   ----------MRSYLRFLVLILLC--LPLTVSE---
AFH40436.1_1   MTH---TAELFK------LLFLVL--LRISHSK--M
AWT24646.1_1   ----------MLQ-I-AAVLHLWY-YFAL--AE---
VEGF-C         MH----LLGFFS--VACSLLAAAL--LPGPREAPAA
VEGF-D         MYREWVVVNVF------MMLYVQL--VQG-------
VEGF-A206      -------MNFLLSWVHWSLALL----LYLHHAKWSQ
VEGF-A165      -------MNFLLSWVHWSLALL----LYLHHAKWSQ
VEGF-A121      -------MNFLLSWVHWSLALL----LYLHHAKWSQ
VEGF-B186      MSP---LLRRLL------LAAL----LQLAPAQAPV
VEGF-B167      MSP---LLRRLL------LAAL----LQLAPAQAPV
PlGF-1         M-P---VMRLFPCFLQLLAGLA----LPAVPPQWAL
VEGF-F         MAA---YL--LA------VAILFC--IQGWPS-GTV
PDGF-A         ----------MRT-LACL-LLLGCGYLAHVLAE---
PDGF-B         ----------MNR-CWALFLSLCC-YLRL-VSA---
PDGF-C         MS--------LFGLLLLTSALAGQ--RQGTQAESNL
PDGF-D         MH------RLIFVYTLICANFCSC--RDTSATPQSA

cons                     :                         


AFH40435.1     VQLH--------------T-----EENS-------R
AFH40436.1     VQLH--------------T-----EENS-------R
AWT24646.1     -----------QGEPIPEDIYHILGSSNIHSIDDLR
AWT24645.1     -----------EGE-IPQEIIEKLAHSEIRSISDLQ
AFH40435.1_1   VQLH--------------T-----EENS-------R
AWT24645.1_1   -----------EGE-IPQEIIEKLAHSEIRSISDLQ
AFH40436.1_1   VQLH--------------T-----EENS-------R
AWT24646.1_1   -----------QGEPIPEDIYHILGSSNIHSIDDLR
VEGF-C         AAAFESGLDLSDAEP--DA-----GEATAYASKDLE
VEGF-D         -SSNEHG-------PVKRS-----SQSTLERS---E
VEGF-A206      AAPM--------------A-----EGGG-------Q
VEGF-A165      AAPM--------------A-----EGGG-------Q
VEGF-A121      AAPM--------------A-----EGGG-------Q
VEGF-B186      SQPD--------------A-----PG----------
VEGF-B167      SQPD--------------A-----PG----------
PlGF-1         SA-----------------------GNG-------S
VEGF-F         ------------------------------------
PDGF-A         -----------EAE-IPREVIERLARSQIHSIRDLQ
PDGF-B         -----------EGDPIPEELYEMLSDHSIRSFDDLQ
PDGF-C         SSKFQFSSN---------K-----EQNGV---QD-P
PDGF-D         SIKALRNANL------RRD-----ESNHL---TDLY

cons                                               


AFH40435.1     SP--------EVI-----------------------
AFH40436.1     SP--------EVI-----------------------
AWT24646.1     VALH-IDSV-EEDRTHADEQ-DFKKDH-T-GSLR-L
AWT24645.1     RLLE-IDSVGEEEDAEAS-----MRPH-GTHSSRH-
AFH40435.1_1   SP--------EVI-----------------------
AWT24645.1_1   RLLE-IDSVGEEEDAEAS-----MRPH-GTHSSRH-
AFH40436.1_1   SP--------EVI-----------------------
AWT24646.1_1   VALH-IDSV-EEDRTHADEQ-DFKKDH-T-GSLR-L
VEGF-C         EQLRSVSSVDELMTVLYPEYWKMYKCQLRKGGWQHN
VEGF-D         QQIRAASSLEELLRITHSEDWKLWRCRLRL------
VEGF-A206      NH-------HEVV-----------------------
VEGF-A165      NH-------HEVV-----------------------
VEGF-A121      NH-------HEVV-----------------------
VEGF-B186      HQ-------RKVV-----------------------
VEGF-B167      HQ-------RKVV-----------------------
PlGF-1         SE-------VEVV-----------------------
VEGF-F         -Q-------GQVR-----------------------
PDGF-A         RLLE-IDSVGSEDSLDTS-----LRAH-GVHATKHV
PDGF-B         RLLH-GDPG-EEDGAELD-L-NMTRSH-SGGELESL
PDGF-C         QH-------ERIITV-------------STNGSIHS
PDGF-D         RR-------DETIQV-------------KGNGYVQS

cons                                               


AFH40435.1     -KWLEVYNRSFCQ--------PRDVIVDIN------
AFH40436.1     -KWLEVYNRSFCQ--------PRDVIVDIN------
AWT24646.1     P-------R------------IVRSLG--TVIEPAV
AWT24645.1     ---HPISIR------------KKRS------IEEAV
AFH40435.1_1   -KWLEVYNRSFCQ--------PRDVIVDIN------
AWT24645.1_1   ---HPISIR------------KKRS------IEEAV
AFH40436.1_1   -KWLEVYNRSFCQ--------PRDVIVDIN------
AWT24646.1_1   P-------R------------IVRSLG--TVIEPAV
VEGF-C         REQANLNSR--TEETIKFAAAHYNTEILKSIDNEWR
VEGF-D         KSFTSMDSRSASHRSTRFAATFYDIETLKVIDEEWQ
VEGF-A206      -KFMDVYQRSYCH--------PIETLVDIF------
VEGF-A165      -KFMDVYQRSYCH--------PIETLVDIF------
VEGF-A121      -KFMDVYQRSYCH--------PIETLVDIF------
VEGF-B186      -SWIDVYTRATCQ--------PREVVVPLT------
VEGF-B167      -SWIDVYTRATCQ--------PREVVVPLT------
PlGF-1         -PFQEVWGRSYCR--------ALERLVDVV------
VEGF-F         -PFLEVHERSACQ--------ARETLVPIL------
PDGF-A         PEKRPLPIR------------RKRS------IEEAV
PDGF-B         A-------R------------GRRSLGSLTIAEPAM
PDGF-C         PRFPHTYPRNTVL-VWRLVAVEENVWIQLTFDERFG
PDGF-D         PRFPNSYPRNLLL-TWRLHS-QENTRIQLVFDNQFG

cons                                             


AFH40435.1     -AE-YPEEV-EYIFM-----------------PSC-
AFH40436.1     -TE-YPEGV-EYIFM-----------------PSC-
AWT24646.1     LAECKTRTE---VF-EITRSMVDPTNANFIVWPPC-
AWT24645.1     LAVCKTRTV---IY-EIPRSQVDPASANFLIWPPC-
AFH40435.1_1   -AE-YPEEV-EYIFM-----------------PSC-
AWT24645.1_1   LAVCKTRTV---IY-EIPRSQVDPASANFLIWPPC-
AFH40436.1_1   -TE-YPEGV-EYIFM-----------------PSC-
AWT24646.1_1   LAECKTRTE---VF-EITRSMVDPTNANFIVWPPC-
VEGF-C         KTQCMPREVCIDVGKEFGVA----TNTFFK--PPC-
VEGF-D         RTQCSPRETCVEVASELGKS----TNTFFK--PPC-
VEGF-A206      -QE-YPDEI-EYIFK-----------------PSC-
VEGF-A165      -QE-YPDEI-EYIFK-----------------PSC-
VEGF-A121      -QE-YPDEI-EYIFK-----------------PSC-
VEGF-B186      -VE-LMGTV-AKQLV-----------------PSC-
VEGF-B167      -VE-LMGTV-AKQLV-----------------PSC-
PlGF-1         -SE-YPSEV-EHMFS-----------------PSC-
VEGF-F         -QE-YPDEI-SDIFR-----------------PSC-
PDGF-A         PAVCKTRTV---IY-EIPRSQVDPTSANFLIWPPC-
PDGF-B         IAECKTRTE---VF-EISRRLIDRTNANFLVWPPC-
PDGF-C         LED-PEDDICKYDFVEVE-----------E--PSD-
PDGF-D         LEE-AENDICRYDFVEVE-----------D--ISET

cons                                            .  


AFH40435.1     VVLKRCAGCCVDEELECVPVRTQTVIMQ--------
AFH40436.1     VVLKRCAGCCVDEELECVPVRTQTVIMQ--------
AWT24646.1     VEVQRCSGCCNTKNVQCKPSKVHVRHVQ-----V--
AWT24645.1     VEVKRCTGCCNTSSLSCQPSQIHHRVVK-----V--
AFH40435.1_1   VVLKRCAGCCVDEELECVPVRTQTVIMQ--------
AWT24645.1_1   VEVKRCTGCCNTSSLSCQPSQIHHRVVK-----V--
AFH40436.1_1   VVLKRCAGCCVDEELECVPVRTQTVIMQ--------
AWT24646.1_1   VEVQRCSGCCNTKNVQCKPSKVHVRHVQ-----V--
VEGF-C         VSVYRCGGCCNSEGLQCMNTSTSYLSKTLFEITVPL
VEGF-D         VNVFRCGGCCNEESLICMNTSTSYISKQLFEISVPL
VEGF-A206      VPLMRCGGCCNDEGLECVPTEESNITMQ--------
VEGF-A165      VPLMRCGGCCNDEGLECVPTEESNITMQ--------
VEGF-A121      VPLMRCGGCCNDEGLECVPTEESNITMQ--------
VEGF-B186      VTVQRCGGCCPDDGLECVPTGQHQVRMQ--------
VEGF-B167      VTVQRCGGCCPDDGLECVPTGQHQVRMQ--------
PlGF-1         VSLLRCTGCCGDENLHCVPVETANVTMQ--------
VEGF-F         VAVLRCSGCCTDESLKCTPVGKHTVDLQ--------
PDGF-A         VEVKRCTGCCNTSSVKCQPSRVHHRSVK-----V--
PDGF-B         VEVQRCSGCCNNRNVQCRPTQVQLRPVQ-----V--
PDGF-C         GTIL--GRWCGSGT---VPGKQISKGNQ--------
PDGF-D         STIIR-GRWCGHKE---VPPRIKSRTNQ--------

cons             :      *                          


AFH40435.1     ------I---------MKRK--Y-------------
AFH40436.1     ------I---------MKRK--Y-------------
AWT24646.1     ------TKIEY-----VRQRPVF---KKV--AVP--
AWT24645.1     ------AKVEF-----VRRKTKL---KEV--LVR--
AFH40435.1_1   ------I---------MKRK--Y-------------
AWT24645.1_1   ------AKVEF-----VRRKTKL---KEV--LVR--
AFH40436.1_1   ------I---------MKRK--Y-------------
AWT24646.1_1   ------TKIEY-----VRQRPVF---KKV--AVP--
VEGF-C         SQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIRRS
VEGF-D         TSVPELVPVKVANHTGCKCLPTAP--RHPYSIIRRS
VEGF-A206      ------I---------MRIKP-H-------------
VEGF-A165      ------I---------MRIKP-H-------------
VEGF-A121      ------I---------MRIKP-H-------------
VEGF-B186      ------I---------LMI--RY-------------
VEGF-B167      ------I---------LMI--RY-------------
PlGF-1         ------L---------LKIRSGD-------------
VEGF-F         ------I---------MRVNPRT-------------
PDGF-A         ------AKVEY-----VRKKPKL---KEV--QVR--
PDGF-B         ------RKIEI-----VRKKPIF---KKA--TVT--
PDGF-C         ------IRIRFVSDEYFPSEPGFCIH---YNIV---
PDGF-D         ------IKITFKSDDYFVAKPGFKIY---YSLLEDF

cons                                               


AFH40435.1     LQSQMVEMQFLQ---------H----NQCECRP-K-
AFH40436.1     LQSQMVEMQFLQ---------H----NQCECRP-K-
AWT24646.1     ----------LE--------DHL----ACRCEP---
AWT24645.1     ----------LE--------EHL----ECVCVP---
AFH40435.1_1   LQSQMVEMQFLQ---------H----NQCECRP-K-
AWT24645.1_1   ----------LE--------EHL----ECVCVP---
AFH40436.1_1   LQSQMVEMQFLQ---------H----NQCECRP-K-
AWT24646.1_1   ----------LE--------DHL----ACRCEP---
VEGF-C         LPATLPQ---CQAANKTCPTNYMWNNHICRCLAQE-
VEGF-D         I--QIPEEDRCSHSKKLCPIDMLWDSNKCKCVLQE-
VEGF-A206      QGQHIGEMSFLQ---------H----NKCECRP-K-
VEGF-A165      QGQHIGEMSFLQ---------H----NKCECRP-K-
VEGF-A121      QGQHIGEMSFLQ---------H----NKCECRP-K-
VEGF-B186      PSSQLGEMSLEE---------H----SQCECRPKK-
VEGF-B167      PSSQLGEMSLEE---------H----SQCECRPKK-
PlGF-1         RPSYV-ELTFSQ---------H----VRCECRP-L-
VEGF-F         QSSKMEVMKFTE---------H----TACECRPRR-
PDGF-A         ----------LE--------EHL----ECACAT---
PDGF-B         ----------LE--------DHL----ACKCET---
PDGF-C         MP---------QFTEAV----------SPSVLPPSA
PDGF-D         QPAAASETNWESVTSSISGVSY----NSPSVTDPT-

cons                      .                        


AFH40435.1     -----RETKV----------------KPER------
AFH40436.1     -----RETKV----------------KPER------
AWT24646.1     ---------V--VHT------------------STR
AWT24645.1     ---------Q-HSNS------------------DLR
AFH40435.1_1   -----RETKV----------------KPER------
AWT24645.1_1   ---------Q-HSNS------------------DLR
AFH40436.1_1   -----RETKV----------------KPER------
AWT24646.1_1   ---------V--VHT------------------STR
VEGF-C         ---DFMFSSDAGDDSTDGFHDIC---GPNK---ELD
VEGF-D         ---E---NPLAGTE--DHSH--------------LQ
VEGF-A206      -----KDRA-----------------RQEK------
VEGF-A165      -----KDRA-----------------RQE-------
VEGF-A121      -----KDRA-----------------RQEK------
VEGF-B186      -----KDSAV----------------KPD-------
VEGF-B167      -----KDSAV----------------KPDS------
PlGF-1         -----REKM-----------------KPER------
VEGF-F         -----KQG------------------EPDG------
PDGF-A         ---------T-SLNP------------------DYR
PDGF-B         ---------VAAARP------------------VTR
PDGF-C         LPLDLLNNAITAFSTLE---DLIRYLEPERWQLDLE
PDGF-D         LIADALDKKIAEFDTVE---DLLKYFNPESWQEDLE

cons                                               


AFH40435.1     ------------------------------------
AFH40436.1     --KRKKEEVKG----H----GQSRK-----------
AWT24646.1     TM--------------PAS-------------TTQA
AWT24645.1     ------------------------------------
AFH40435.1_1   ------------------------------------
AWT24645.1_1   ------------------------------------
AFH40436.1_1   --KRKKEEVKG----H----GQSRK-----------
AWT24646.1_1   TM--------------PAS-------------TTQA
VEGF-C         E---ETCQCVCRAGLRPASCGPHKE-LDRNSC----
VEGF-D         E---------------PALCGPH-------------
VEGF-A206      ---KSVRG-KG----K----GQKRK-----------
VEGF-A165      ------------------------------------
VEGF-A121      ------------------------------------
VEGF-B186      ---RAATP--------------HH------------
VEGF-B167      --PRPLCP-RC----T-----QHHQ-----------
PlGF-1         ---R--RP-KG----R----G-KRR-----------
VEGF-F         --P---------------------------------
PDGF-A         ------------------------------------
PDGF-B         S---------------PGG-------------SQEQ
PDGF-C         DLYRPTWQLLGKAFVF----GRKSRVVDLNLLTEEV
PDGF-D         NMYLDTPRYRGRSY-H----DRKSK-VDLDRLNDDA

cons                                               


AFH40435.1     ------------------------------------
AFH40436.1     --------------RKKQKQ--------FALI----
AWT24646.1     Q--AAAVRN-STGIA--------------D-HQQQ-
AWT24645.1     -------EE-ETDV--------------------R-
AFH40435.1_1   ------------------------------------
AWT24645.1_1   -------EE-ETDV--------------------R-
AFH40436.1_1   --------------RKKQKQ--------FALI----
AWT24646.1_1   Q--AAAVRN-STGIA--------------D-HQQQ-
VEGF-C         ---QCVCKN---KLFPSQCGANREFDEN------TC
VEGF-D         ----------------------MMFDED------RC
VEGF-A206      --------------RKKSRY------KSWSVYV---
VEGF-A165      ------------------------------------
VEGF-A121      ------------------------------------
VEGF-B186      --------------RPQPRSV-----PGWD------
VEGF-B167      --------------RPDPRT----------------
PlGF-1         --------------REKQR-----------------
VEGF-F         --------------KEKPRR-------G--------
PDGF-A         -------EE-DTG---------------------R-
PDGF-B         R--AKTPQT-RVTIR--------------TVRVRR-
PDGF-C         RLYSCTPRNFSVSIREELKRTDTIFWPG-CLLVKRC
PDGF-D         KRYSCTPRNYSVNIREELKLANVVFFPR-CLLVQRC

cons                                               


AFH40435.1     ----------------SQC-S-PC----TEK--RRH
AFH40436.1     ----------------SQC-S-PC----TEK--RRH
AWT24646.1     ----------------------PRR-RKQ----RKH
AWT24645.1     ------------------------------------
AFH40435.1_1   ----------------SQC-S-PC----TEK--RRH
AWT24645.1_1   ------------------------------------
AFH40436.1_1   ----------------SQC-S-PC----TEK--RRH
AWT24646.1_1   ----------------------PRR-RKQ----RKH
VEGF-C         QCVCKRTCPRNQPLNPGKCAC-ECTES-PQKCLLKG
VEGF-D         ECVCKTPCPKDLIQHPKNCSCFECKES-LETCCQKH
VEGF-A206      GARC-CLMPWSLP-GPHPC-G-PC----SER--RKH
VEGF-A165      ----------------NPC-G-PC----SER--RKH
VEGF-A121      ------------------------------------
VEGF-B186      -SAPGAPSPADIT-HPTPAPG-P----------SAH
VEGF-B167      -CRCRCRRRSFLR-----CQG-R----------GLE
PlGF-1         ---------------PTDC----------------H
VEGF-F         --------------------G-V----------RAK
PDGF-A         ----------------------PRESGKK----RKR
PDGF-B         ----------------------PPK-GKH----RKF
PDGF-C         GGNCAC----CLH-NCNEC---QCVPSKVTK--KYH
PDGF-D         GGNCGC----GTV-NWRSC---TCNSGKTVK--KYH

cons                                               


AFH40435.1     L----NPETCEC--TCKMTQQRCRAK-------GLE
AFH40436.1     L----NPETCEC--TCKMTQQRCRAK-------GLE
AWT24646.1     ----------------KTYRN------------GLS
AWT24645.1     ------------------------------------
AFH40435.1_1   L----NPETCEC--TCKMTQQRCRAK-------GLE
AWT24645.1_1   ------------------------------------
AFH40436.1_1   L----NPETCEC--TCKMTQQRCRAK-------GLE
AWT24646.1_1   ----------------KTYRN------------GLS
VEGF-C         K--KFHHQTCSC------YRRPCTNRQKACEP-GFS
VEGF-D         K--LFHPDTCSCEDRCPFHTRPCASGKTACAK-HCR
VEGF-A206      LFVQ-DPQTCKC--SCKNTDSRCKAR-------QLE
VEGF-A165      LFVQ-DPQTCKC--SCKNTDSRCKAR-------QLE
VEGF-A121      ------------------------------------
VEGF-B186      A----APSTTSA--L---TPGPAAA-----------
VEGF-B167      L----NPDT---------------------------
PlGF-1         L----------C--G----DA---------------
VEGF-F         F-----PFV---------------------------
PDGF-A         ----------------KR------------------
PDGF-B         ----------------KHTHD------------KTA
PDGF-C         EVLQLRP---K-------TGVRGLHK--SLTDVALE
PDGF-D         EVLQFEPGHIK-------R--RGRAKTMALVDIQLD

cons                                               


AFH40435.1     LNER-NCRC----ETVRR----
AFH40436.1     LNER-NCRC----ETVRR----
AWT24646.1     LKESLAT---------------
AWT24645.1     ----------------------
AFH40435.1_1   LNER-NCRC----ETVRR----
AWT24645.1_1   ----------------------
AFH40436.1_1   LNER-NCRC----ETVRR----
AWT24646.1_1   LKESLAT---------------
VEGF-C         YSEE-VCRCV--PSYWKRPQMS
VEGF-D         FPKE-K-RAAQGPHSRKNP---
VEGF-A206      LNER-TCRC----DKPRR----
VEGF-A165      LNER-TCRC----DKPRR----
VEGF-A121      --------C----DKPRR----
VEGF-B186      --AA-DAAA----SSVAKGGA-
VEGF-B167      ------CRC----RKLRR----
PlGF-1         --------------VPRR----
VEGF-F         ----------------------
PDGF-A         LKPT------------------
PDGF-B         LKETLGA---------------
PDGF-C         HHEECDCVC----RG--STGG-
PDGF-D         HHERCDCIC----SS--RPPR-

cons